ValueError: Must pass either crs or epsg.
Hi @ctena @mguevara here a new issue that I paste here for the record, again apparently not systematic issue since I have other experiments with same branch/comits but different periods that are running well.
a9vj_20191215_000_2_HERMES_GR:
/gpfs/projects/bsc32/repository/apps/conda_envs/HERMESv3_GR_v2.1.5b/lib/python3.9/site-packages/pyproj/crs/crs.py:141: FutureWarning: '+init=<authority>:<code>' syntax is deprecated. '<authority>:<code>' is the preferred initialization method. When making the change, be mindful of axis order changes: https://pyproj4.github.io/pyproj/stable/gotchas.html#axis-order-changes-in-proj-6
in_crs_string = _prepare_from_proj_string(in_crs_string)
Traceback (most recent call last):
File "/gpfs/scratch/cns108/bsc032883/a9vj/HERMESv3/sources/HERMESv3_GR/hermesv3_gr/hermes.py", line 154, in <module>
run()
File "/gpfs/scratch/cns108/bsc032883/a9vj/HERMESv3/sources/HERMESv3_GR/hermesv3_gr/hermes.py", line 147, in run
date = HermesGr(Config()).main()
File "/gpfs/scratch/cns108/bsc032883/a9vj/HERMESv3/sources/HERMESv3_GR/hermesv3_gr/hermes.py", line 107, in main
ei.do_regrid()
File "/gpfs/scratch/cns108/bsc032883/a9vj/HERMESv3/sources/HERMESv3_GR/hermesv3_gr/modules/emision_inventories/point_gfas_emission_inventory.py", line 273, in do_regrid
gdf = gpd.sjoin(gdf.to_crs(grid_shp.crs), grid_shp, how='inner')
File "/gpfs/projects/bsc32/repository/apps/conda_envs/HERMESv3_GR_v2.1.5b/lib/python3.9/site-packages/geopandas/geodataframe.py", line 1410, in to_crs
geom = df.geometry.to_crs(crs=crs, epsg=epsg)
File "/gpfs/projects/bsc32/repository/apps/conda_envs/HERMESv3_GR_v2.1.5b/lib/python3.9/site-packages/geopandas/geoseries.py", line 1175, in to_crs
self.values.to_crs(crs=crs, epsg=epsg), index=self.index, name=self.name
File "/gpfs/projects/bsc32/repository/apps/conda_envs/HERMESv3_GR_v2.1.5b/lib/python3.9/site-packages/geopandas/array.py", line 864, in to_crs
raise ValueError("Must pass either crs or epsg.")
ValueError: Must pass either crs or epsg.
/gpfs/scratch/cns108/bsc032883/a9vj/HERMESv3/sources/HERMESv3_GR/hermesv3_gr/modules/speciation/speciation.py:196: UserWarning: WARNING: The input pollutants ['voc20'] do not appear in the speciation profile E115.
warning("WARNING: The input pollutants {0} do not appear in the speciation profile {1}.".format(
/gpfs/scratch/cns108/bsc032883/a9vj/HERMESv3/sources/HERMESv3_GR/hermesv3_gr/modules/speciation/speciation.py:196: UserWarning: WARNING: The input pollutants ['voc20'] do not appear in the speciation profile E097.
warning("WARNING: The input pollutants {0} do not appear in the speciation profile {1}.".format(
/gpfs/scratch/cns108/bsc032883/a9vj/HERMESv3/sources/HERMESv3_GR/hermesv3_gr/modules/speciation/speciation.py:196: UserWarning: WARNING: The input pollutants ['voc20'] do not appear in the speciation profile E934.
warning("WARNING: The input pollutants {0} do not appear in the speciation profile {1}.".format(
/gpfs/scratch/cns108/bsc032883/a9vj/HERMESv3/sources/HERMESv3_GR/hermesv3_gr/modules/speciation/speciation.py:196: UserWarning: WARNING: The input pollutants ['voc20'] do not appear in the speciation profile E100.
warning("WARNING: The input pollutants {0} do not appear in the speciation profile {1}.".format(
/gpfs/scratch/cns108/bsc032883/a9vj/HERMESv3/sources/HERMESv3_GR/hermesv3_gr/modules/speciation/speciation.py:196: UserWarning: WARNING: The input pollutants ['voc20'] do not appear in the speciation profile E108.
warning("WARNING: The input pollutants {0} do not appear in the speciation profile {1}.".format(
/gpfs/scratch/cns108/bsc032883/a9vj/HERMESv3/sources/HERMESv3_GR/hermesv3_gr/modules/speciation/speciation.py:196: UserWarning: WARNING: The input pollutants ['voc25'] do not appear in the speciation profile E936.
warning("WARNING: The input pollutants {0} do not appear in the speciation profile {1}.".format(
/gpfs/scratch/cns108/bsc032883/a9vj/HERMESv3/sources/HERMESv3_GR/hermesv3_gr/modules/speciation/speciation.py:196: UserWarning: WARNING: The input pollutants ['voc20'] do not appear in the speciation profile E907.
warning("WARNING: The input pollutants {0} do not appear in the speciation profile {1}.".format(
slurmstepd: error: *** STEP 30547722.0 ON gs28r1b25 CANCELLED AT 2025-10-10T06:32:17 DUE TO TIME LIMIT ***
slurmstepd: error: *** JOB 30547722 ON gs28r1b25 CANCELLED AT 2025-10-10T06:32:17 DUE TO TIME LIMIT ***
srun: Job step aborted: Waiting up to 32 seconds for job step to finish.